feat: harden Python workflow and structured planning

Replace the uv-specific skill with a portable Python skill and rewrite the default user system prompt as a concise, structured Markdown execution policy.

Normalize a single fenced structured-JSON response, retry invalid skill selection with think disabled, validate selected skill output, and make coding plans keep editing and verification in one task.

Document the file_edit patch payload, expose that contract in the tool catalog, and convert malformed patch input into a retryable tool failure instead of terminating the agent task.

Update configuration and runtime tests for the Python skill, exact tool catalog, structured-output retry, and implementation-and-verification planning guidance.

Verified with 82 Agent.Core tests and an agent-mcp Python scheduling scenario with 49 passing unittest cases.

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